Calculates multi–locus haplotype frequencies (two or more loci) or allele frequencies under two alternative models (either Hardy-Weinberg equilibrium or inbreeding–like).
Read more about these tools (and see examples of input files) in the usage overview.
The estimation uses the Hardy-Weinberg expected proportions by default, but can be set to include the inbreeding coefficient (F).
Output can include alternative genotypes and their respective probabilities for phenotypes that lead to ambigous genotypes.
Input must be a valid UNIFORMAT file with